PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.300720.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 216aa    MW: 24770.4 Da    PI: 10.5005
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.300720.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92.1e-17956148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  l+ +v+  G g+W+++ar  g++Rt+k+c++rw++yl
   Cucsa.300720.1  9 KGPWTAEEDSALYTYVTVNGEGHWNSVARSTGLKRTGKSCRLRWLNYL 56
                     79********************************************97 PP

2Myb_DNA-binding475.8e-1562105146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
   Cucsa.300720.1  62 RGNITLQEQLLILQLHSRWGNR-WSKIAEFLP-GRTDNEIKNYWRT 105
                      7899******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.323460IPR017930Myb domain
SuperFamilySSF466891.24E-307103IPR009057Homeodomain-like
SMARTSM007179.3E-14858IPR001005SANT/Myb domain
PfamPF002498.5E-15956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-211063IPR009057Homeodomain-like
CDDcd001675.47E-91156No hitNo description
SMARTSM007171.7E-1361109IPR001005SANT/Myb domain
PROSITE profilePS5129418.20761111IPR017930Myb domain
PfamPF002496.8E-1462105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2164110IPR009057Homeodomain-like
CDDcd001673.78E-682105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGSDDDVKKG PWTAEEDSAL YTYVTVNGEG HWNSVARSTG LKRTGKSCRL RWLNYLRPNL  60
RRGNITLQEQ LLILQLHSRW GNRWSKIAEF LPGRTDNEIK NYWRTRVQKQ AKQLNCDVNS  120
QRFRDAMRLV WIPRLVERIE AATSAQSPPL QPPPPPSLLL PPCIATDTST STWEQKIKPK  180
EKLIVTKLEN STMQWSPKGE GTKLLFFFLS SFFPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-24611124128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818276e-99LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018.
GenBankLN7132586e-99LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651532.11e-128PREDICTED: transcription factor MYB108-like
SwissprotQ9LDE13e-70MY108_ARATH; Transcription factor MYB108
TrEMBLA0A0A0L8621e-128A0A0A0L862_CUCSA; Uncharacterized protein
STRINGGLYMA19G40650.14e-80(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.13e-71myb domain protein 108